RPL39


Summary: Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 60S subunit. The protein belongs to the S39E family of ribosomal proteins. It is located in the cytoplasm. In rat, the protein is the smallest, and one of the most basic, proteins of the ribosome. This gene is co-transcribed with the U69 small nucleolar RNA gene, which is located in its second intron. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. [provided by RefSeq, Jul 2008].

NameOMIM IDEnsembl IDHGNC IDPHARMGKB IDMap Location
ribosomal protein L39MIM:300899Ensembl:ENSG00000198918HGNC:HGNC:10350PA34743Xq24

GO terms in RPL39


Term TypeEvidence TypeGO Term IDGO Des.
CCIDAGO:0005615extracellular space
CCTASGO:0005829cytosol
CCHDAGO:0022625cytosolic large ribosomal subunit
CCIBAGO:0022625cytosolic large ribosomal subunit
CCIDAGO:0022625cytosolic large ribosomal subunit
CCTASGO:0022625cytosolic large ribosomal subunit
CCIDAGO:0042788polysomal ribosome
BPTASGO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
BPIDAGO:0002181cytoplasmic translation
BPIDAGO:0002227innate immune response in mucosa
BPNASGO:0006412translation
BPTASGO:0006412translation
BPTASGO:0006413translational initiation
BPTASGO:0006614SRP-dependent cotranslational protein targeting to membrane
BPIDAGO:0019731antibacterial humoral response
BPIDAGO:0050830defense response to Gram-positive bacterium
BPIDAGO:0061844antimicrobial humoral immune response mediated by antimicrobial peptide
MFTASGO:0003723RNA binding
MFNASGO:0003735structural constituent of ribosome
MFTASGO:0003735structural constituent of ribosome

Gene expression in normal tissue: RPL39

Gene-model tissue-cancer distribution: Bubble Plot

Gene-drug pathway distribution

Pathways in RPL39


DatabasePathway IDPathway Des.
reactomeR-HSA-1266738Developmental Biology
reactomeR-HSA-1430728Metabolism
reactomeR-HSA-156827L13a-mediated translational silencing of Ceruloplasmin expression
reactomeR-HSA-156842Eukaryotic Translation Elongation
reactomeR-HSA-156902Peptide chain elongation
reactomeR-HSA-1643685Disease
reactomeR-HSA-168254Influenza Infection
reactomeR-HSA-168255Influenza Life Cycle
reactomeR-HSA-168273Influenza Viral RNA Transcription and Replication
reactomeR-HSA-1799339SRP-dependent cotranslational protein targeting to membrane
reactomeR-HSA-1799339SRP-dependent cotranslational protein targeting to membrane
reactomeR-HSA-192823Viral mRNA Translation
reactomeR-HSA-2408522Selenoamino acid metabolism
reactomeR-HSA-2408557Selenocysteine synthesis
reactomeR-HSA-376176Signaling by ROBO receptors
reactomeR-HSA-392499Metabolism of proteins
reactomeR-HSA-392499Metabolism of proteins
reactomeR-HSA-422475Axon guidance
reactomeR-HSA-5663205Infectious disease
reactomeR-HSA-6791226Major pathway of rRNA processing in the nucleolus and cytosol
reactomeR-HSA-71291Metabolism of amino acids and derivatives
reactomeR-HSA-72312rRNA processing
reactomeR-HSA-72613Eukaryotic Translation Initiation
reactomeR-HSA-72689Formation of a pool of free 40S subunits
reactomeR-HSA-72706GTP hydrolysis and joining of the 60S ribosomal subunit
reactomeR-HSA-72737Cap-dependent Translation Initiation
reactomeR-HSA-72764Eukaryotic Translation Termination
reactomeR-HSA-72766Translation
reactomeR-HSA-72766Translation
reactomeR-HSA-8868773rRNA processing in the nucleus and cytosol
reactomeR-HSA-8953854Metabolism of RNA
reactomeR-HSA-9010553Regulation of expression of SLITs and ROBOs
reactomeR-HSA-927802Nonsense-Mediated Decay (NMD)
reactomeR-HSA-975956Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
reactomeR-HSA-975957Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
kegghsa03010Ribosome - Homo sapiens (human)
wikipathwaysWP477Cytoplasmic Ribosomal Proteins

Gene-Drug: Aster Plot


Drug IDDrug NameModel Num.
iGMDRD68Paclitaxel2

Gene in drug-gene network: Network Plot

Gene-drug targets distribution

Gene Structure: PDB

Models in RPL39

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