CDKN2A
Summary: This gene generates several transcript variants which differ in their first exons. At least three alternatively spliced variants encoding distinct proteins have been reported, two of which encode structurally related isoforms known to function as inhibitors of CDK4 kinase. The remaining transcript includes an alternate first exon located 20 Kb upstream of the remainder of the gene; this transcript contains an alternate open reading frame (ARF) that specifies a protein which is structurally unrelated to the products of the other variants. This ARF product functions as a stabilizer of the tumor suppressor protein p53 as it can interact with, and sequester, the E3 ubiquitin-protein ligase MDM2, a protein responsible for the degradation of p53. In spite of the structural and functional differences, the CDK inhibitor isoforms and the ARF product encoded by this gene, through the regulatory roles of CDK4 and p53 in cell cycle G1 progression, share a common functionality in cell cycle G1 control. This gene is frequently mutated or deleted in a wide variety of tumors, and is known to be an important tumor suppressor gene. [provided by RefSeq, Sep 2012].
Name | OMIM ID | Ensembl ID | HGNC ID | PHARMGKB ID | Map Location |
---|---|---|---|---|---|
OMIM IDMIM:600160 Ensembl IDEnsembl:ENSG00000147889 HGNC IDHGNC:HGNC:1787 PHARMGKB IDPA106 Map Location9p21.3 |
GO terms in CDKN2A
Term Type | Evidence Type | GO Term ID | GO Des. |
---|---|---|---|
BP | IDA | GO:0000082 | G1/S transition of mitotic cell cycle |
BP | IMP | GO:0001953 | negative regulation of cell-matrix adhesion |
BP | IDA | GO:0007050 | cell cycle arrest |
BP | IMP | GO:0007050 | cell cycle arrest |
BP | IEP | GO:0007265 | Ras protein signal transduction |
BP | IDA | GO:0008285 | negative regulation of cell proliferation |
Gene expression in normal tissue: CDKN2A
Gene-model tissue-cancer distribution: Bubble Plot
Gene-drug pathway distribution
Pathways in CDKN2A
Database | Pathway ID | Pathway Des. |
---|---|---|
biocarta | arfpathway | tumor suppressor arf inhibits ribosomal biogenesis |
biocarta | cellcyclepathway | cyclins and cell cycle regulation |
biocarta | ctcfpathway | ctcf: first multivalent nuclear factor |
biocarta | g1pathway | cell cycle: g1/s check point |
reactome | R-HSA-1640170 | Cell Cycle |
reactome | R-HSA-212436 | Generic Transcription Pathway |
Gene-Drug: Aster Plot
Gene in drug-gene network: Network Plot

Gene-drug targets distribution
Gene Structure: PDB
Models in CDKN2A
Model | Level | Reference ID | Tissue | Cancer | Drug | Clinical Response | Source | |
---|---|---|---|---|---|---|---|---|
No matching records found |