ARID1A


Summary: This gene encodes a member of the SWI/SNF family, whose members have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. It possesses at least two conserved domains that could be important for its function. First, it has a DNA-binding domain that can specifically bind an AT-rich DNA sequence known to be recognized by a SNF/SWI complex at the beta-globin locus. Second, the C-terminus of the protein can stimulate glucocorticoid receptor-dependent transcriptional activation. It is thought that the protein encoded by this gene confers specificity to the SNF/SWI complex and may recruit the complex to its targets through either protein-DNA or protein-protein interactions. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008].

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OMIM ID
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Gene Categories:

CLINICALLY ACTIONABLE

GO terms in ARID1A


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Term Type
Evidence Type
GO Term ID
GO Des.
BP IEA GO:0000122 negative regulation of transcription by RNA polymerase II
BP IEA GO:0001704 formation of primary germ layer
BP IEA GO:0001843 neural tube closure
BP IEA GO:0003205 cardiac chamber development
BP IEA GO:0003408 optic cup formation involved in camera-type eye development
BP IDA GO:0006337 nucleosome disassembly
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Gene expression in normal tissue: ARID1A

Gene-model tissue-cancer distribution: Bubble Plot

Gene-drug pathway distribution

undefined75Other, kinases7PI3K/MTOR signaling5ERK MAPK signaling5Chromatin histone acetylation4IGFR signaling3Apoptosis regulation3Breast cancer2RTK signaling2EGFR signaling2

Pathways in ARID1A


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Database
Pathway ID
Pathway Des.
reactome R-HSA-212436 Generic Transcription Pathway
reactome R-HSA-3214858 RMTs methylate histone arginines
reactome R-HSA-3247509 Chromatin modifying enzymes
reactome R-HSA-4839726 Chromatin organization
reactome R-HSA-73857 RNA Polymerase II Transcription
reactome R-HSA-74160 Gene expression (Transcription)
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Gene-Drug: Aster Plot


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Drug ID
Drug Name
Model Num.
iGMDRD1021 Trastuzumab (ANXA1 high) 1
iGMDRD286 Nsc 632839 8
iGMDRD329 Merck60 2
iGMDRD263 AACOCF3 3
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Gene in drug-gene network: Network Plot

Gene-drug targets distribution

Gene Structure: PDB

Models in ARID1A

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Model
Level
Reference ID
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Cancer
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No matching records found

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