PIKFYVE
Summary: Phosphorylated derivatives of phosphatidylinositol (PtdIns) regulate cytoskeletal functions, membrane trafficking, and receptor signaling by recruiting protein complexes to cell- and endosomal-membranes. Humans have multiple PtdIns proteins that differ by the degree and position of phosphorylation of the inositol ring. This gene encodes an enzyme (PIKfyve; also known as phosphatidylinositol-3-phosphate 5-kinase type III or PIPKIII) that phosphorylates the D-5 position in PtdIns and phosphatidylinositol-3-phosphate (PtdIns3P) to make PtdIns5P and PtdIns(3,5)biphosphate. The D-5 position also can be phosphorylated by type I PtdIns4P-5-kinases (PIP5Ks) that are encoded by distinct genes and preferentially phosphorylate D-4 phosphorylated PtdIns. In contrast, PIKfyve preferentially phosphorylates D-3 phosphorylated PtdIns. In addition to being a lipid kinase, PIKfyve also has protein kinase activity. PIKfyve regulates endomembrane homeostasis and plays a role in the biogenesis of endosome carrier vesicles from early endosomes. Mutations in this gene cause corneal fleck dystrophy (CFD); an autosomal dominant disorder characterized by numerous small white flecks present in all layers of the corneal stroma. Histologically, these flecks appear to be keratocytes distended with lipid and mucopolysaccharide filled intracytoplasmic vacuoles. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, May 2010].
Name | OMIM ID | Ensembl ID | HGNC ID | PHARMGKB ID | Map Location |
---|---|---|---|---|---|
phosphoinositide kinase, FYVE-type zinc finger containing | MIM:609414 | Ensembl:ENSG00000115020 | HGNC:HGNC:23785 | PA165697116 | 2q34 |
Gene Categories:
KINASEGO terms in PIKFYVE
Term Type | Evidence Type | GO Term ID | GO Des. |
---|---|---|---|
MF | IPI | GO:0005515 | protein binding |
MF | IEA | GO:0005524 | ATP binding |
MF | IEA | GO:0008270 | zinc ion binding |
MF | TAS | GO:0016308 | 1-phosphatidylinositol-4-phosphate 5-kinase activity |
MF | TAS | GO:0043813 | phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity |
BP | TAS | GO:0006661 | phosphatidylinositol biosynthetic process |
BP | IMP | GO:0006898 | receptor-mediated endocytosis |
BP | IEA | GO:0032288 | myelin assembly |
BP | IMP | GO:0034504 | protein localization to nucleus |
BP | IEA | GO:0035556 | intracellular signal transduction |
BP | IEA | GO:0036092 | phosphatidylinositol-3-phosphate biosynthetic process |
BP | IMP | GO:0042147 | retrograde transport, endosome to Golgi |
BP | IEA | GO:0046854 | phosphatidylinositol phosphorylation |
BP | IC | GO:1904562 | phosphatidylinositol 5-phosphate metabolic process |
BP | IMP | GO:2000785 | regulation of autophagosome assembly |
CC | TAS | GO:0000139 | Golgi membrane |
CC | IEA | GO:0005829 | cytosol |
CC | IEA | GO:0005911 | cell-cell junction |
CC | IDA | GO:0010008 | endosome membrane |
CC | IEA | GO:0012506 | vesicle membrane |
CC | IDA | GO:0031901 | early endosome membrane |
CC | TAS | GO:0031901 | early endosome membrane |
CC | TAS | GO:0031902 | late endosome membrane |
CC | IDA | GO:0045121 | membrane raft |
CC | IEA | GO:0048471 | perinuclear region of cytoplasm |
Gene expression in normal tissue: PIKFYVE
Gene-model tissue-cancer distribution: Bubble Plot
Gene-drug pathway distribution
Pathways in PIKFYVE
Database | Pathway ID | Pathway Des. |
---|---|---|
reactome | R-HSA-1430728 | Metabolism |
reactome | R-HSA-1430728 | Metabolism |
reactome | R-HSA-1483255 | PI Metabolism |
reactome | R-HSA-1483255 | PI Metabolism |
reactome | R-HSA-1483257 | Phospholipid metabolism |
reactome | R-HSA-1483257 | Phospholipid metabolism |
reactome | R-HSA-1660514 | Synthesis of PIPs at the Golgi membrane |
reactome | R-HSA-1660514 | Synthesis of PIPs at the Golgi membrane |
reactome | R-HSA-1660516 | Synthesis of PIPs at the early endosome membrane |
reactome | R-HSA-1660516 | Synthesis of PIPs at the early endosome membrane |
reactome | R-HSA-1660517 | Synthesis of PIPs at the late endosome membrane |
reactome | R-HSA-1660517 | Synthesis of PIPs at the late endosome membrane |
reactome | R-HSA-556833 | Metabolism of lipids |
reactome | R-HSA-556833 | Metabolism of lipids |
kegg | hsa00562 | Inositol phosphate metabolism - Homo sapiens (human) |
kegg | hsa04070 | Phosphatidylinositol signaling system - Homo sapiens (human) |
kegg | hsa04145 | Phagosome - Homo sapiens (human) |
kegg | hsa04810 | Regulation of actin cytoskeleton - Homo sapiens (human) |
humancyc | PWY-6352 | 3-phosphoinositide biosynthesis |
humancyc | PWY-6371 | superpathway of inositol phosphate compounds |
smpdb | SMP00011 | Inositol Metabolism |
smpdb | SMP00463 | Phosphatidylinositol Phosphate Metabolism |
smpdb | SMP00582 | Joubert syndrome |
Gene-Drug: Aster Plot
Drug ID | Drug Name | Model Num. |
---|---|---|
iGMDRD427 | ABT737 | 10 |
iGMDRD670 | ML 210 | 3 |
iGMDRD144 | NSC95397 | 5 |
iGMDRD494 | Neopeltolide | 3 |
iGMDRD126 | Tipifarnib | 6 |
iGMDRD599 | Salermide | 5 |
iGMDRD772 | BRD4770 | 2 |
iGMDRD297 | Austocystin D | 3 |
iGMDRD679 | Bistramide A | 2 |
iGMDRD466 | Chaetocin | 4 |
iGMDRD280 | CYTOCHALASIN B | 2 |
iGMDRD152 | 179324-69-7 | 2 |
iGMDRD171 | Pemetrexed | 4 |
iGMDRD782 | DC-45-A2 | 2 |
iGMDRD441 | TW 37 | 2 |
iGMDRD52 | Rotenone | 6 |
iGMDRD294 | Batimastat | 2 |
iGMDRD270 | Ciclosporin | 3 |
iGMDRD474 | Avrainvillamide | 3 |
iGMDRD60 | Quinoclamine | 2 |
iGMDRD23 | Gossypol | 2 |
iGMDRD100 | Zebularine | 1 |
iGMDRD74 | Idarubicin | 2 |
iGMDRD887 | Compound 23 citrate | 2 |
iGMDRD888 | Compound 44 | 2 |
iGMDRD562 | Navitoclax | 6 |
iGMDRD116 | CD437 | 3 |
iGMDRD345 | Compound 10b [PMID: 11504634] | 5 |
iGMDRD330 | BRD4132 | 4 |
iGMDRD512 | nutlin 3 | 1 |
iGMDRD248 | BRD4354 | 5 |
iGMDRD901 | ELCPK | 1 |
iGMDRD154 | NSC23766 | 2 |
iGMDRD85 | Ursolic acid | 1 |
iGMDRD213 | SMR000068650 | 2 |
iGMDRD267 | Oligomycin A | 2 |
iGMDRD137 | Indisulam | 2 |
iGMDRD5 | Tyrphostin AG 1478 | 2 |
iGMDRD227 | Fatostatin A | 2 |
iGMDRD886 | Compound 1541A | 2 |
iGMDRD871 | BRD6368 | 4 |
iGMDRD414 | MST-312 | 2 |
iGMDRD329 | Merck60 | 3 |
Gene in drug-gene network: Network Plot
Gene-drug targets distribution
Gene Structure: PDB
Models in PIKFYVE